covid_vs_flu: update O’Driscoll (now published in Nature)

This commit is contained in:
Marc Bevand
2020-11-22 13:51:52 -08:00
parent fb929069ac
commit 821b6eeb18
3 changed files with 25 additions and 23 deletions
+24 -22
View File
@@ -137,27 +137,29 @@ ifrs_covid = [
(90,maxage): 16.21,
}),
# ODriscoll et al.: Age-specific mortality and immunity patterns of SARS-CoV-2 infection in 45 countries
# https://www.medrxiv.org/content/10.1101/2020.08.24.20180851v1
# (table S4)
# ODriscoll et al.: Age-specific mortality and immunity patterns of SARS-CoV-2
# https://www.nature.com/articles/s41586-020-2918-0
# Supplementary information
# https://static-content.springer.com/esm/art%3A10.1038%2Fs41586-020-2918-0/MediaObjects/41586_2020_2918_MOESM1_ESM.pdf
# (table S3)
('ODriscoll', {
(0,4): 0.002,
(5,9): 0,
(10,14): 0,
(15,19): 0.002,
(20,24): 0.004,
(25,29): 0.009,
(30,34): 0.017,
(35,39): 0.029,
(40,44): 0.053,
(45,49): 0.086,
(50,54): 0.154,
(55,59): 0.241,
(60,64): 0.359,
(65,69): 0.642,
(70,74): 1.076,
(75,79): 2.276,
(80,maxage): 7.274,
(0,4): 0.003,
(5,9): 0.001,
(10,14): 0.001,
(15,19): 0.003,
(20,24): 0.006,
(25,29): 0.013,
(30,34): 0.024,
(35,39): 0.040,
(40,44): 0.075,
(45,49): 0.121,
(50,54): 0.207,
(55,59): 0.323,
(60,64): 0.456,
(65,69): 1.075,
(70,74): 1.674,
(75,79): 3.203,
(80,maxage): 8.292,
}),
# Ward et al.: Antibody prevalence for SARS-CoV-2 in England following first peak of the pandemic: REACT2 study in 100,000 adults
@@ -388,8 +390,8 @@ def main():
fig.suptitle('Infection Fatality Ratio of COVID-19 vs. Seasonal Influenza')
ax.text(0, -0.11,
'Source: https://github.com/mbevand/covid19-age-stratified-ifr\n'
'Note: the vertical lines on two COVID-19 IFR curves (Poletti and ODriscoll) are caused by the IFR being\n'
'estimated to be zero by Poletti for age groups 0-19 and 20-49, and by ODriscoll for 5-9 and 10-14.\n',
'Note: the vertical lines on one COVID-19 IFR curve (Poletti) are caused by the IFR being\n'
'estimated to be zero for age groups 0-19 and 20-49.\n',
transform=ax.transAxes, fontsize='small', verticalalignment='top',
)
ax.text(1, 1, 'Created by: Marc Bevand — @zorinaq',