covid_vs_flu: update O’Driscoll (now published in Nature)
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+24
-22
@@ -137,27 +137,29 @@ ifrs_covid = [
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(90,maxage): 16.21,
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}),
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# O’Driscoll et al.: Age-specific mortality and immunity patterns of SARS-CoV-2 infection in 45 countries
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# https://www.medrxiv.org/content/10.1101/2020.08.24.20180851v1
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# (table S4)
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# O’Driscoll et al.: Age-specific mortality and immunity patterns of SARS-CoV-2
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# https://www.nature.com/articles/s41586-020-2918-0
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# Supplementary information
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# https://static-content.springer.com/esm/art%3A10.1038%2Fs41586-020-2918-0/MediaObjects/41586_2020_2918_MOESM1_ESM.pdf
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# (table S3)
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('O’Driscoll', {
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(0,4): 0.002,
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(5,9): 0,
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(10,14): 0,
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(15,19): 0.002,
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(20,24): 0.004,
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(25,29): 0.009,
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(30,34): 0.017,
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(35,39): 0.029,
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(40,44): 0.053,
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(45,49): 0.086,
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(50,54): 0.154,
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(55,59): 0.241,
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(60,64): 0.359,
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(65,69): 0.642,
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(70,74): 1.076,
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(75,79): 2.276,
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(80,maxage): 7.274,
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(0,4): 0.003,
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(5,9): 0.001,
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(10,14): 0.001,
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(15,19): 0.003,
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(20,24): 0.006,
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(25,29): 0.013,
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(30,34): 0.024,
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(35,39): 0.040,
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(40,44): 0.075,
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(45,49): 0.121,
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(50,54): 0.207,
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(55,59): 0.323,
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(60,64): 0.456,
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(65,69): 1.075,
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(70,74): 1.674,
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(75,79): 3.203,
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(80,maxage): 8.292,
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}),
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# Ward et al.: Antibody prevalence for SARS-CoV-2 in England following first peak of the pandemic: REACT2 study in 100,000 adults
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@@ -388,8 +390,8 @@ def main():
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fig.suptitle('Infection Fatality Ratio of COVID-19 vs. Seasonal Influenza')
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ax.text(0, -0.11,
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'Source: https://github.com/mbevand/covid19-age-stratified-ifr\n'
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'Note: the vertical lines on two COVID-19 IFR curves (Poletti and O’Driscoll) are caused by the IFR being\n'
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'estimated to be zero by Poletti for age groups 0-19 and 20-49, and by O’Driscoll for 5-9 and 10-14.\n',
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'Note: the vertical lines on one COVID-19 IFR curve (Poletti) are caused by the IFR being\n'
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'estimated to be zero for age groups 0-19 and 20-49.\n',
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transform=ax.transAxes, fontsize='small', verticalalignment='top',
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)
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ax.text(1, 1, 'Created by: Marc Bevand — @zorinaq',
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