add O’Driscoll age-stratified IFR

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Marc Bevand
2020-09-27 17:56:13 -07:00
parent aa4bd12c4d
commit 0dcf3bd2f9
2 changed files with 241 additions and 216 deletions
+214 -212
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@@ -26,6 +26,7 @@ IFR estimates come from:
1. [Levin et al.: Assessing the age specificity of infection fatality rates for COVID-19: systematic review, meta-analysis, and public policy implications](https://www.medrxiv.org/content/10.1101/2020.07.23.20160895v5) (table 3) 1. [Levin et al.: Assessing the age specificity of infection fatality rates for COVID-19: systematic review, meta-analysis, and public policy implications](https://www.medrxiv.org/content/10.1101/2020.07.23.20160895v5) (table 3)
1. [Gudbjartsson et al.: Humoral Immune Response to SARS-CoV-2 in Iceland](https://www.nejm.org/doi/full/10.1056/NEJMoa2026116), 1. [Gudbjartsson et al.: Humoral Immune Response to SARS-CoV-2 in Iceland](https://www.nejm.org/doi/full/10.1056/NEJMoa2026116),
[Supplementary Appendix 1](https://www.nejm.org/doi/suppl/10.1056/NEJMoa2026116/suppl_file/nejmoa2026116_appendix_1.pdf) (table S7) [Supplementary Appendix 1](https://www.nejm.org/doi/suppl/10.1056/NEJMoa2026116/suppl_file/nejmoa2026116_appendix_1.pdf) (table S7)
1. [ODriscoll et al.: Age-specific mortality and immunity patterns of SARS-CoV-2 infection in 45 countries](https://www.medrxiv.org/content/10.1101/2020.08.24.20180851v1) (table S4)
Data for the population pyramids comes from the Data for the population pyramids comes from the
[United Nations](https://population.un.org/wpp/Download/Standard/Population/), [United Nations](https://population.un.org/wpp/Download/Standard/Population/),
@@ -37,227 +38,228 @@ specifically the first sheet of [Population by Age Groups - Both Sexes](https://
The overall expected IFR percentages are summarized in this table (sorted by The overall expected IFR percentages are summarized in this table (sorted by
IFR according to ENE-COV column): IFR according to ENE-COV column):
| ENE-COV | US_CDC | Verity | Levin | Gudbj | Region | | ENE-COV | US_CDC | Verity | Levin | Gudbj | O'Drisc | Region |
| ------- | ------ | ------ | ----- | ------- | ------ | | ------- | ------- | ------- | ------- | ------- | ------- | ------ |
| 1.274 | 1.311 | 1.605 | 2.247 | 1.283 | Japan | | 1.274 | 1.311 | 1.605 | 2.247 | 1.283 | 0.961 | Japan |
| 1.065 | 1.092 | 1.382 | 1.847 | 1.068 | Italy | | 1.065 | 1.092 | 1.382 | 1.847 | 1.068 | 0.811 | Italy |
| 1.041 | 1.043 | 1.339 | 1.806 | 1.057 | Greece | | 1.041 | 1.043 | 1.339 | 1.806 | 1.057 | 0.796 | Greece |
| 0.993 | 1.012 | 1.305 | 1.702 | 0.994 | Germany | | 0.993 | 1.012 | 1.305 | 1.702 | 0.994 | 0.764 | Germany |
| 0.984 | 1.045 | 1.320 | 1.726 | 0.986 | Portugal | | 0.984 | 1.045 | 1.320 | 1.726 | 0.986 | 0.753 | Portugal |
| 0.931 | 0.985 | 1.270 | 1.648 | 0.918 | Martinique | | 0.931 | 0.985 | 1.270 | 1.648 | 0.918 | 0.704 | Martinique |
| 0.919 | 0.933 | 1.221 | 1.658 | 0.918 | Lithuania | | 0.919 | 0.933 | 1.221 | 1.658 | 0.918 | 0.706 | Lithuania |
| 0.916 | 0.942 | 1.207 | 1.648 | 0.921 | Spain | | 0.916 | 0.942 | 1.207 | 1.648 | 0.921 | 0.694 | Spain |
| 0.914 | 0.941 | 1.201 | 1.606 | 0.913 | France | | 0.914 | 0.941 | 1.201 | 1.606 | 0.913 | 0.682 | France |
| 0.899 | 1.008 | 1.248 | 1.556 | 0.883 | Finland | | 0.899 | 1.008 | 1.248 | 1.556 | 0.883 | 0.671 | Finland |
| 0.881 | 0.919 | 1.192 | 1.624 | 0.870 | Latvia | | 0.881 | 0.919 | 1.192 | 1.624 | 0.870 | 0.672 | Latvia |
| 0.875 | 0.957 | 1.205 | 1.528 | 0.857 | Puerto Rico | | 0.875 | 0.957 | 1.205 | 1.528 | 0.857 | 0.655 | Puerto Rico |
| 0.868 | 0.892 | 1.171 | 1.516 | 0.870 | Estonia | | 0.868 | 0.892 | 1.171 | 1.516 | 0.870 | 0.672 | Estonia |
| 0.865 | 0.932 | 1.209 | 1.487 | 0.855 | Croatia | | 0.865 | 0.932 | 1.209 | 1.487 | 0.855 | 0.665 | Croatia |
| 0.855 | 0.965 | 1.205 | 1.471 | 0.835 | Malta | | 0.855 | 0.965 | 1.205 | 1.471 | 0.835 | 0.637 | Malta |
| 0.846 | 0.881 | 1.137 | 1.478 | 0.847 | Belgium | | 0.846 | 0.881 | 1.137 | 1.478 | 0.847 | 0.639 | Belgium |
| 0.843 | 0.905 | 1.181 | 1.489 | 0.829 | Slovenia | | 0.843 | 0.905 | 1.181 | 1.489 | 0.829 | 0.645 | Slovenia |
| 0.840 | 0.943 | 1.154 | 1.471 | 0.838 | Sweden | | 0.840 | 0.943 | 1.154 | 1.471 | 0.838 | 0.632 | Sweden |
| 0.836 | 0.910 | 1.149 | 1.462 | 0.830 | Austria | | 0.836 | 0.910 | 1.149 | 1.462 | 0.830 | 0.638 | Austria |
| 0.825 | 0.897 | 1.132 | 1.447 | 0.819 | Switzerland | | 0.825 | 0.897 | 1.132 | 1.447 | 0.819 | 0.624 | Switzerland |
| 0.810 | 0.861 | 1.117 | 1.396 | 0.802 | Europe | | 0.810 | 0.861 | 1.117 | 1.396 | 0.802 | 0.615 | Europe |
| 0.802 | 0.909 | 1.141 | 1.394 | 0.785 | Netherlands | | 0.802 | 0.909 | 1.141 | 1.394 | 0.785 | 0.603 | Netherlands |
| 0.801 | 0.949 | 1.181 | 1.377 | 0.779 | Bulgaria | | 0.801 | 0.949 | 1.181 | 1.377 | 0.779 | 0.608 | Bulgaria |
| 0.798 | 0.864 | 1.113 | 1.399 | 0.779 | Guadeloupe | | 0.798 | 0.864 | 1.113 | 1.399 | 0.779 | 0.600 | Guadeloupe |
| 0.797 | 0.935 | 1.136 | 1.370 | 0.782 | Denmark | | 0.797 | 0.935 | 1.136 | 1.370 | 0.782 | 0.595 | Denmark |
| 0.794 | 0.868 | 1.089 | 1.384 | 0.794 | United Kingdom | | 0.794 | 0.868 | 1.089 | 1.384 | 0.794 | 0.598 | United Kingdom |
| 0.791 | 0.811 | 1.102 | 1.367 | 0.761 | China, Hong Kong SAR | | 0.791 | 0.811 | 1.102 | 1.367 | 0.761 | 0.588 | China, Hong Kong SAR |
| 0.759 | 0.830 | 1.090 | 1.285 | 0.745 | Romania | | 0.759 | 0.830 | 1.090 | 1.285 | 0.745 | 0.578 | Romania |
| 0.753 | 0.854 | 1.101 | 1.323 | 0.732 | Hungary | | 0.753 | 0.854 | 1.101 | 1.323 | 0.732 | 0.573 | Hungary |
| 0.745 | 0.800 | 1.064 | 1.285 | 0.724 | Poland | | 0.745 | 0.800 | 1.064 | 1.285 | 0.724 | 0.557 | Poland |
| 0.739 | 0.828 | 1.059 | 1.315 | 0.737 | Channel Islands | | 0.739 | 0.828 | 1.059 | 1.315 | 0.737 | 0.565 | Channel Islands |
| 0.738 | 0.878 | 1.092 | 1.302 | 0.717 | Czechia | | 0.738 | 0.878 | 1.092 | 1.302 | 0.717 | 0.555 | Czechia |
| 0.734 | 0.810 | 1.047 | 1.288 | 0.714 | Canada | | 0.734 | 0.810 | 1.047 | 1.288 | 0.714 | 0.548 | Canada |
| 0.719 | 0.756 | 0.998 | 1.259 | 0.705 | Barbados | | 0.719 | 0.756 | 0.998 | 1.259 | 0.705 | 0.534 | Barbados |
| 0.713 | 0.808 | 1.038 | 1.210 | 0.694 | Curaçao | | 0.713 | 0.808 | 1.038 | 1.210 | 0.694 | 0.538 | Curaçao |
| 0.709 | 0.802 | 1.007 | 1.239 | 0.699 | Norway | | 0.709 | 0.802 | 1.007 | 1.239 | 0.699 | 0.528 | Norway |
| 0.680 | 0.800 | 1.029 | 1.160 | 0.659 | Serbia | | 0.680 | 0.800 | 1.029 | 1.160 | 0.659 | 0.515 | Serbia |
| 0.676 | 0.694 | 0.904 | 1.193 | 0.686 | Uruguay | | 0.676 | 0.694 | 0.904 | 1.193 | 0.686 | 0.505 | Uruguay |
| 0.675 | 0.745 | 0.967 | 1.181 | 0.660 | Northern America | | 0.675 | 0.745 | 0.967 | 1.181 | 0.660 | 0.503 | Northern America |
| 0.671 | 0.736 | 0.944 | 1.174 | 0.670 | Australia | | 0.671 | 0.736 | 0.944 | 1.174 | 0.670 | 0.503 | Australia |
| 0.671 | 0.733 | 0.983 | 1.103 | 0.651 | Ukraine | | 0.671 | 0.733 | 0.983 | 1.103 | 0.651 | 0.513 | Ukraine |
| 0.669 | 0.738 | 0.958 | 1.169 | 0.654 | United States of America | | 0.669 | 0.738 | 0.958 | 1.169 | 0.654 | 0.497 | United States of America |
| 0.659 | 0.757 | 1.011 | 1.088 | 0.620 | Bosnia and Herzegovina | | 0.659 | 0.757 | 1.011 | 1.088 | 0.620 | 0.503 | Bosnia and Herzegovina |
| 0.654 | 0.742 | 0.945 | 1.137 | 0.645 | New Zealand | | 0.654 | 0.742 | 0.945 | 1.137 | 0.645 | 0.490 | New Zealand |
| 0.644 | 0.735 | 0.941 | 1.131 | 0.630 | Cuba | | 0.644 | 0.735 | 0.941 | 1.131 | 0.630 | 0.489 | Cuba |
| 0.641 | 0.877 | 1.059 | 1.152 | 0.608 | United States Virgin Islands | | 0.641 | 0.877 | 1.059 | 1.152 | 0.608 | 0.491 | United States Virgin Islands |
| 0.633 | 0.725 | 0.963 | 1.090 | 0.606 | Republic of Korea | | 0.633 | 0.725 | 0.963 | 1.090 | 0.606 | 0.483 | Republic of Korea |
| 0.628 | 0.686 | 0.938 | 1.100 | 0.599 | China, Taiwan Province of China | | 0.628 | 0.686 | 0.938 | 1.100 | 0.599 | 0.472 | China, Taiwan Province of China |
| 0.624 | 0.663 | 0.916 | 1.030 | 0.606 | Russian Federation | | 0.624 | 0.663 | 0.916 | 1.030 | 0.606 | 0.473 | Russian Federation |
| 0.624 | 0.657 | 0.921 | 1.082 | 0.606 | Belarus | | 0.624 | 0.657 | 0.921 | 1.082 | 0.606 | 0.483 | Belarus |
| 0.615 | 0.668 | 0.881 | 1.078 | 0.616 | Luxembourg | | 0.615 | 0.668 | 0.881 | 1.078 | 0.616 | 0.467 | Luxembourg |
| 0.607 | 0.670 | 0.896 | 1.002 | 0.598 | Georgia | | 0.607 | 0.670 | 0.896 | 1.002 | 0.598 | 0.464 | Georgia |
| 0.605 | 0.683 | 0.888 | 1.061 | 0.599 | Iceland | | 0.605 | 0.683 | 0.888 | 1.061 | 0.599 | 0.453 | Iceland |
| 0.604 | 0.709 | 0.935 | 1.059 | 0.580 | Slovakia | | 0.604 | 0.709 | 0.935 | 1.059 | 0.580 | 0.457 | Slovakia |
| 0.582 | 0.667 | 0.891 | 0.989 | 0.567 | Montenegro | | 0.582 | 0.667 | 0.891 | 0.989 | 0.567 | 0.444 | Montenegro |
| 0.563 | 0.653 | 0.838 | 0.972 | 0.559 | Ireland | | 0.563 | 0.653 | 0.838 | 0.972 | 0.559 | 0.424 | Ireland |
| 0.561 | 0.649 | 0.839 | 0.957 | 0.559 | Cyprus | | 0.561 | 0.649 | 0.839 | 0.957 | 0.559 | 0.426 | Cyprus |
| 0.548 | 0.659 | 0.857 | 0.941 | 0.533 | Albania | | 0.548 | 0.659 | 0.857 | 0.941 | 0.533 | 0.418 | Albania |
| 0.531 | 0.652 | 0.874 | 0.920 | 0.508 | Aruba | | 0.531 | 0.652 | 0.874 | 0.920 | 0.508 | 0.412 | Aruba |
| 0.518 | 0.580 | 0.754 | 0.902 | 0.526 | Oceania | | 0.518 | 0.580 | 0.754 | 0.902 | 0.526 | 0.388 | Oceania |
| 0.510 | 0.588 | 0.795 | 0.881 | 0.491 | Thailand | | 0.510 | 0.588 | 0.795 | 0.881 | 0.491 | 0.385 | Thailand |
| 0.500 | 0.569 | 0.763 | 0.880 | 0.493 | Réunion | | 0.500 | 0.569 | 0.763 | 0.880 | 0.493 | 0.377 | Réunion |
| 0.499 | 0.545 | 0.710 | 0.872 | 0.516 | Israel | | 0.499 | 0.545 | 0.710 | 0.872 | 0.516 | 0.371 | Israel |
| 0.497 | 0.522 | 0.748 | 0.794 | 0.491 | Armenia | | 0.497 | 0.522 | 0.748 | 0.794 | 0.491 | 0.377 | Armenia |
| 0.497 | 0.616 | 0.816 | 0.851 | 0.474 | North Macedonia | | 0.497 | 0.616 | 0.816 | 0.851 | 0.474 | 0.378 | North Macedonia |
| 0.493 | 0.550 | 0.736 | 0.861 | 0.492 | Chile | | 0.493 | 0.550 | 0.736 | 0.861 | 0.492 | 0.370 | Chile |
| 0.479 | 0.550 | 0.796 | 0.829 | 0.433 | Singapore | | 0.479 | 0.550 | 0.796 | 0.829 | 0.433 | 0.356 | Singapore |
| 0.454 | 0.515 | 0.671 | 0.790 | 0.471 | Argentina | | 0.454 | 0.515 | 0.671 | 0.790 | 0.471 | 0.343 | Argentina |
| 0.449 | 0.514 | 0.738 | 0.770 | 0.412 | China, Macao SAR | | 0.449 | 0.514 | 0.738 | 0.770 | 0.412 | 0.328 | China, Macao SAR |
| 0.447 | 0.544 | 0.732 | 0.772 | 0.425 | Mauritius | | 0.447 | 0.544 | 0.732 | 0.772 | 0.425 | 0.331 | Mauritius |
| 0.435 | 0.501 | 0.721 | 0.766 | 0.413 | Republic of Moldova | | 0.435 | 0.501 | 0.721 | 0.766 | 0.413 | 0.332 | Republic of Moldova |
| 0.415 | 0.511 | 0.681 | 0.717 | 0.402 | Trinidad and Tobago | | 0.415 | 0.511 | 0.681 | 0.717 | 0.402 | 0.310 | Trinidad and Tobago |
| 0.413 | 0.475 | 0.638 | 0.712 | 0.417 | Costa Rica | | 0.413 | 0.475 | 0.638 | 0.712 | 0.417 | 0.309 | Costa Rica |
| 0.413 | 0.468 | 0.626 | 0.704 | 0.413 | Saint Lucia | | 0.413 | 0.468 | 0.626 | 0.704 | 0.413 | 0.304 | Saint Lucia |
| 0.409 | 0.507 | 0.695 | 0.707 | 0.385 | China | | 0.409 | 0.507 | 0.695 | 0.707 | 0.385 | 0.308 | China |
| 0.394 | 0.497 | 0.648 | 0.712 | 0.409 | Antigua and Barbuda | | 0.394 | 0.497 | 0.648 | 0.712 | 0.409 | 0.303 | Antigua and Barbuda |
| 0.387 | 0.495 | 0.651 | 0.668 | 0.377 | Sri Lanka | | 0.387 | 0.495 | 0.651 | 0.668 | 0.377 | 0.286 | Sri Lanka |
| 0.377 | 0.487 | 0.635 | 0.622 | 0.373 | Dem. People's Republic of Korea | | 0.377 | 0.487 | 0.635 | 0.622 | 0.373 | 0.284 | Dem. People's Republic of Korea |
| 0.376 | 0.437 | 0.594 | 0.645 | 0.382 | Brazil | | 0.376 | 0.437 | 0.594 | 0.645 | 0.382 | 0.282 | Brazil |
| 0.365 | 0.464 | 0.611 | 0.618 | 0.373 | Guam | | 0.365 | 0.464 | 0.611 | 0.618 | 0.373 | 0.279 | Guam |
| 0.364 | 0.425 | 0.569 | 0.627 | 0.381 | Jamaica | | 0.364 | 0.425 | 0.569 | 0.627 | 0.381 | 0.275 | Jamaica |
| 0.361 | 0.454 | 0.605 | 0.663 | 0.375 | Saint Vincent and the Grenadines | | 0.361 | 0.454 | 0.605 | 0.663 | 0.375 | 0.279 | Saint Vincent and the Grenadines |
| 0.359 | 0.399 | 0.540 | 0.623 | 0.380 | Panama | | 0.359 | 0.399 | 0.540 | 0.623 | 0.380 | 0.269 | Panama |
| **0.358** | **0.418** | **0.566** | **0.615** | **0.370** | **WORLD** | | 0.358 | 0.418 | 0.566 | 0.615 | 0.370 | 0.269 | WORLD |
| 0.356 | 0.410 | 0.555 | 0.614 | 0.371 | Latin America and the Caribbean | | 0.356 | 0.410 | 0.555 | 0.614 | 0.371 | 0.267 | Latin America and the Caribbean |
| 0.355 | 0.412 | 0.560 | 0.613 | 0.367 | Colombia | | 0.355 | 0.412 | 0.560 | 0.613 | 0.367 | 0.267 | Colombia |
| 0.354 | 0.438 | 0.595 | 0.642 | 0.368 | Grenada | | 0.354 | 0.438 | 0.595 | 0.642 | 0.368 | 0.271 | Grenada |
| 0.347 | 0.399 | 0.528 | 0.595 | 0.377 | El Salvador | | 0.347 | 0.399 | 0.528 | 0.595 | 0.377 | 0.265 | El Salvador |
| 0.343 | 0.363 | 0.528 | 0.602 | 0.355 | Viet Nam | | 0.343 | 0.363 | 0.528 | 0.602 | 0.355 | 0.257 | Viet Nam |
| 0.342 | 0.408 | 0.552 | 0.588 | 0.356 | Turkey | | 0.342 | 0.408 | 0.552 | 0.588 | 0.356 | 0.260 | Turkey |
| 0.339 | 0.397 | 0.537 | 0.583 | 0.358 | Peru | | 0.339 | 0.397 | 0.537 | 0.583 | 0.358 | 0.258 | Peru |
| 0.336 | 0.394 | 0.553 | 0.579 | 0.344 | Tunisia | | 0.336 | 0.394 | 0.553 | 0.579 | 0.344 | 0.256 | Tunisia |
| 0.327 | 0.432 | 0.573 | 0.547 | 0.328 | New Caledonia | | 0.327 | 0.432 | 0.573 | 0.547 | 0.328 | 0.249 | New Caledonia |
| 0.325 | 0.394 | 0.541 | 0.559 | 0.331 | Asia | | 0.325 | 0.394 | 0.541 | 0.559 | 0.331 | 0.245 | Asia |
| 0.310 | 0.350 | 0.463 | 0.535 | 0.346 | Bolivia (Plurinational State of) | | 0.310 | 0.350 | 0.463 | 0.535 | 0.346 | 0.233 | Bolivia (Plurinational State of) |
| 0.309 | 0.348 | 0.480 | 0.532 | 0.333 | Dominican Republic | | 0.309 | 0.348 | 0.480 | 0.532 | 0.333 | 0.232 | Dominican Republic |
| 0.307 | 0.348 | 0.503 | 0.505 | 0.319 | Kazakhstan | | 0.307 | 0.348 | 0.503 | 0.505 | 0.319 | 0.236 | Kazakhstan |
| 0.306 | 0.352 | 0.485 | 0.532 | 0.327 | Mexico | | 0.306 | 0.352 | 0.485 | 0.532 | 0.327 | 0.230 | Mexico |
| 0.305 | 0.365 | 0.502 | 0.526 | 0.317 | Venezuela (Bolivarian Republic of) | | 0.305 | 0.365 | 0.502 | 0.526 | 0.317 | 0.228 | Venezuela (Bolivarian Republic of) |
| 0.303 | 0.347 | 0.474 | 0.525 | 0.329 | Ecuador | | 0.303 | 0.347 | 0.474 | 0.525 | 0.329 | 0.228 | Ecuador |
| 0.295 | 0.346 | 0.482 | 0.501 | 0.317 | Lebanon | | 0.295 | 0.346 | 0.482 | 0.501 | 0.317 | 0.225 | Lebanon |
| 0.293 | 0.400 | 0.542 | 0.477 | 0.284 | Seychelles | | 0.293 | 0.400 | 0.542 | 0.477 | 0.284 | 0.225 | Seychelles |
| 0.287 | 0.384 | 0.527 | 0.513 | 0.286 | French Polynesia | | 0.287 | 0.384 | 0.527 | 0.513 | 0.286 | 0.220 | French Polynesia |
| 0.282 | 0.326 | 0.456 | 0.456 | 0.298 | Guyana | | 0.282 | 0.326 | 0.456 | 0.456 | 0.298 | 0.208 | Guyana |
| 0.280 | 0.335 | 0.463 | 0.469 | 0.298 | Suriname | | 0.280 | 0.335 | 0.463 | 0.469 | 0.298 | 0.211 | Suriname |
| 0.273 | 0.313 | 0.474 | 0.452 | 0.279 | Azerbaijan | | 0.273 | 0.313 | 0.474 | 0.452 | 0.279 | 0.208 | Azerbaijan |
| 0.272 | 0.337 | 0.474 | 0.462 | 0.284 | Morocco | | 0.272 | 0.337 | 0.474 | 0.462 | 0.284 | 0.207 | Morocco |
| 0.269 | 0.358 | 0.495 | 0.460 | 0.272 | Bahamas | | 0.269 | 0.358 | 0.495 | 0.460 | 0.272 | 0.206 | Bahamas |
| 0.263 | 0.325 | 0.453 | 0.442 | 0.279 | Malaysia | | 0.263 | 0.325 | 0.453 | 0.442 | 0.279 | 0.196 | Malaysia |
| 0.260 | 0.305 | 0.426 | 0.446 | 0.289 | Algeria | | 0.260 | 0.305 | 0.426 | 0.446 | 0.289 | 0.198 | Algeria |
| 0.257 | 0.307 | 0.418 | 0.436 | 0.287 | Paraguay | | 0.257 | 0.307 | 0.418 | 0.436 | 0.287 | 0.193 | Paraguay |
| 0.251 | 0.297 | 0.403 | 0.423 | 0.288 | Bhutan | | 0.251 | 0.297 | 0.403 | 0.423 | 0.288 | 0.190 | Bhutan |
| 0.246 | 0.301 | 0.431 | 0.418 | 0.263 | Iran (Islamic Republic of) | | 0.246 | 0.301 | 0.431 | 0.418 | 0.263 | 0.186 | Iran (Islamic Republic of) |
| 0.234 | 0.293 | 0.414 | 0.398 | 0.253 | India | | 0.234 | 0.293 | 0.414 | 0.398 | 0.253 | 0.176 | India |
| 0.229 | 0.293 | 0.416 | 0.387 | 0.244 | Indonesia | | 0.229 | 0.293 | 0.416 | 0.387 | 0.244 | 0.172 | Indonesia |
| 0.228 | 0.259 | 0.373 | 0.393 | 0.262 | Nicaragua | | 0.228 | 0.259 | 0.373 | 0.393 | 0.262 | 0.173 | Nicaragua |
| 0.221 | 0.269 | 0.368 | 0.374 | 0.255 | Bangladesh | | 0.221 | 0.269 | 0.368 | 0.374 | 0.255 | 0.167 | Bangladesh |
| 0.221 | 0.232 | 0.349 | 0.374 | 0.260 | Cabo Verde | | 0.221 | 0.232 | 0.349 | 0.374 | 0.260 | 0.170 | Cabo Verde |
| 0.217 | 0.284 | 0.375 | 0.310 | 0.247 | Tonga | | 0.217 | 0.284 | 0.375 | 0.310 | 0.247 | 0.163 | Tonga |
| 0.215 | 0.277 | 0.401 | 0.366 | 0.228 | Myanmar | | 0.215 | 0.277 | 0.401 | 0.366 | 0.228 | 0.161 | Myanmar |
| 0.208 | 0.235 | 0.334 | 0.351 | 0.244 | Belize | | 0.208 | 0.235 | 0.334 | 0.351 | 0.244 | 0.153 | Belize |
| 0.206 | 0.235 | 0.331 | 0.353 | 0.249 | Honduras | | 0.206 | 0.235 | 0.331 | 0.353 | 0.249 | 0.155 | Honduras |
| 0.204 | 0.233 | 0.323 | 0.349 | 0.253 | Guatemala | | 0.204 | 0.233 | 0.323 | 0.349 | 0.253 | 0.155 | Guatemala |
| 0.204 | 0.255 | 0.360 | 0.342 | 0.232 | Philippines | | 0.204 | 0.255 | 0.360 | 0.342 | 0.232 | 0.152 | Philippines |
| 0.202 | 0.267 | 0.360 | 0.344 | 0.232 | Nepal | | 0.202 | 0.267 | 0.360 | 0.344 | 0.232 | 0.151 | Nepal |
| 0.197 | 0.249 | 0.381 | 0.331 | 0.210 | Brunei Darussalam | | 0.197 | 0.249 | 0.381 | 0.331 | 0.210 | 0.149 | Brunei Darussalam |
| 0.194 | 0.237 | 0.331 | 0.330 | 0.233 | Haiti | | 0.194 | 0.237 | 0.331 | 0.330 | 0.233 | 0.146 | Haiti |
| 0.193 | 0.251 | 0.355 | 0.325 | 0.220 | South Africa | | 0.193 | 0.251 | 0.355 | 0.325 | 0.220 | 0.145 | South Africa |
| 0.193 | 0.222 | 0.339 | 0.316 | 0.220 | Turkmenistan | | 0.193 | 0.222 | 0.339 | 0.316 | 0.220 | 0.145 | Turkmenistan |
| 0.192 | 0.247 | 0.343 | 0.321 | 0.224 | Egypt | | 0.192 | 0.247 | 0.343 | 0.321 | 0.224 | 0.142 | Egypt |
| 0.192 | 0.262 | 0.376 | 0.318 | 0.206 | Fiji | | 0.192 | 0.262 | 0.376 | 0.318 | 0.206 | 0.142 | Fiji |
| 0.188 | 0.220 | 0.335 | 0.310 | 0.217 | Kyrgyzstan | | 0.188 | 0.220 | 0.335 | 0.310 | 0.217 | 0.141 | Kyrgyzstan |
| 0.188 | 0.245 | 0.353 | 0.344 | 0.216 | French Guiana | | 0.188 | 0.245 | 0.353 | 0.344 | 0.216 | 0.143 | French Guiana |
| 0.187 | 0.219 | 0.340 | 0.317 | 0.212 | Uzbekistan | | 0.187 | 0.219 | 0.340 | 0.317 | 0.212 | 0.142 | Uzbekistan |
| 0.185 | 0.224 | 0.323 | 0.317 | 0.222 | Syrian Arab Republic | | 0.185 | 0.224 | 0.323 | 0.317 | 0.222 | 0.140 | Syrian Arab Republic |
| 0.182 | 0.226 | 0.324 | 0.307 | 0.216 | Libya | | 0.182 | 0.226 | 0.324 | 0.307 | 0.216 | 0.140 | Libya |
| 0.181 | 0.229 | 0.319 | 0.308 | 0.221 | Lesotho | | 0.181 | 0.229 | 0.319 | 0.308 | 0.221 | 0.136 | Lesotho |
| 0.173 | 0.216 | 0.320 | 0.294 | 0.201 | Mongolia | | 0.173 | 0.216 | 0.320 | 0.294 | 0.201 | 0.130 | Mongolia |
| 0.170 | 0.225 | 0.317 | 0.287 | 0.205 | Djibouti | | 0.170 | 0.225 | 0.317 | 0.287 | 0.205 | 0.128 | Djibouti |
| 0.170 | 0.238 | 0.325 | 0.271 | 0.197 | Samoa | | 0.170 | 0.238 | 0.325 | 0.271 | 0.197 | 0.126 | Samoa |
| 0.168 | 0.221 | 0.314 | 0.288 | 0.199 | Cambodia | | 0.168 | 0.221 | 0.314 | 0.288 | 0.199 | 0.126 | Cambodia |
| 0.164 | 0.210 | 0.292 | 0.274 | 0.206 | Pakistan | | 0.164 | 0.210 | 0.292 | 0.274 | 0.206 | 0.123 | Pakistan |
| 0.158 | 0.204 | 0.273 | 0.268 | 0.208 | Eritrea | | 0.158 | 0.204 | 0.273 | 0.268 | 0.208 | 0.118 | Eritrea |
| 0.157 | 0.183 | 0.277 | 0.252 | 0.203 | Maldives | | 0.157 | 0.183 | 0.277 | 0.252 | 0.203 | 0.123 | Maldives |
| 0.157 | 0.194 | 0.268 | 0.281 | 0.212 | Mayotte | | 0.157 | 0.194 | 0.268 | 0.281 | 0.212 | 0.120 | Mayotte |
| 0.156 | 0.199 | 0.279 | 0.260 | 0.199 | Jordan | | 0.156 | 0.199 | 0.279 | 0.260 | 0.199 | 0.118 | Jordan |
| 0.155 | 0.203 | 0.289 | 0.263 | 0.193 | Botswana | | 0.155 | 0.203 | 0.289 | 0.263 | 0.193 | 0.115 | Botswana |
| 0.154 | 0.199 | 0.287 | 0.257 | 0.191 | Lao People's Democratic Republic | | 0.154 | 0.199 | 0.287 | 0.257 | 0.191 | 0.115 | Lao People's Democratic Republic |
| 0.152 | 0.209 | 0.279 | 0.253 | 0.197 | Timor-Leste | | 0.152 | 0.209 | 0.279 | 0.253 | 0.197 | 0.113 | Timor-Leste |
| 0.146 | 0.180 | 0.282 | 0.248 | 0.177 | Saudi Arabia | | 0.146 | 0.180 | 0.282 | 0.248 | 0.177 | 0.112 | Saudi Arabia |
| 0.145 | 0.187 | 0.254 | 0.239 | 0.199 | Eswatini | | 0.145 | 0.187 | 0.254 | 0.239 | 0.199 | 0.109 | Eswatini |
| 0.139 | 0.173 | 0.248 | 0.234 | 0.188 | Namibia | | 0.139 | 0.173 | 0.248 | 0.234 | 0.188 | 0.104 | Namibia |
| 0.135 | 0.176 | 0.302 | 0.222 | 0.145 | Kuwait | | 0.135 | 0.176 | 0.302 | 0.222 | 0.145 | 0.103 | Kuwait |
| 0.134 | 0.173 | 0.244 | 0.224 | 0.183 | Sudan | | 0.134 | 0.173 | 0.244 | 0.224 | 0.183 | 0.100 | Sudan |
| 0.133 | 0.173 | 0.245 | 0.221 | 0.182 | Gabon | | 0.133 | 0.173 | 0.245 | 0.221 | 0.182 | 0.101 | Gabon |
| 0.130 | 0.167 | 0.231 | 0.216 | 0.183 | Ethiopia | | 0.130 | 0.167 | 0.231 | 0.216 | 0.183 | 0.096 | Ethiopia |
| 0.130 | 0.174 | 0.242 | 0.224 | 0.179 | Solomon Islands | | 0.130 | 0.174 | 0.242 | 0.224 | 0.179 | 0.098 | Solomon Islands |
| 0.128 | 0.158 | 0.245 | 0.207 | 0.169 | Tajikistan | | 0.128 | 0.158 | 0.245 | 0.207 | 0.169 | 0.095 | Tajikistan |
| 0.127 | 0.165 | 0.236 | 0.212 | 0.176 | Africa | | 0.127 | 0.165 | 0.236 | 0.212 | 0.176 | 0.094 | Africa |
| 0.125 | 0.157 | 0.229 | 0.212 | 0.176 | Iraq | | 0.125 | 0.157 | 0.229 | 0.212 | 0.176 | 0.095 | Iraq |
| 0.125 | 0.150 | 0.253 | 0.199 | 0.156 | Bahrain | | 0.125 | 0.150 | 0.253 | 0.199 | 0.156 | 0.093 | Bahrain |
| 0.124 | 0.163 | 0.225 | 0.204 | 0.176 | South Sudan | | 0.124 | 0.163 | 0.225 | 0.204 | 0.176 | 0.092 | South Sudan |
| 0.123 | 0.168 | 0.244 | 0.196 | 0.163 | Vanuatu | | 0.123 | 0.168 | 0.244 | 0.196 | 0.163 | 0.091 | Vanuatu |
| 0.122 | 0.165 | 0.247 | 0.204 | 0.160 | Papua New Guinea | | 0.122 | 0.165 | 0.247 | 0.204 | 0.160 | 0.090 | Papua New Guinea |
| 0.121 | 0.157 | 0.226 | 0.203 | 0.171 | Liberia | | 0.121 | 0.157 | 0.226 | 0.203 | 0.171 | 0.091 | Liberia |
| 0.121 | 0.157 | 0.222 | 0.203 | 0.173 | Benin | | 0.121 | 0.157 | 0.222 | 0.203 | 0.173 | 0.090 | Benin |
| 0.120 | 0.155 | 0.224 | 0.199 | 0.170 | Mauritania | | 0.120 | 0.155 | 0.224 | 0.199 | 0.170 | 0.089 | Mauritania |
| 0.120 | 0.157 | 0.222 | 0.196 | 0.171 | State of Palestine | | 0.120 | 0.157 | 0.222 | 0.196 | 0.171 | 0.089 | State of Palestine |
| 0.119 | 0.150 | 0.219 | 0.173 | 0.170 | Sao Tome and Principe | | 0.119 | 0.150 | 0.219 | 0.173 | 0.170 | 0.089 | Sao Tome and Principe |
| 0.118 | 0.178 | 0.278 | 0.228 | 0.136 | Micronesia (Fed. States of) | | 0.118 | 0.178 | 0.278 | 0.228 | 0.136 | 0.087 | Micronesia (Fed. States of) |
| 0.118 | 0.138 | 0.222 | 0.195 | 0.165 | Oman | | 0.118 | 0.138 | 0.222 | 0.195 | 0.165 | 0.090 | Oman |
| 0.118 | 0.160 | 0.260 | 0.195 | 0.143 | Western Sahara | | 0.118 | 0.160 | 0.260 | 0.195 | 0.143 | 0.087 | Western Sahara |
| 0.116 | 0.157 | 0.230 | 0.190 | 0.159 | Ghana | | 0.116 | 0.157 | 0.230 | 0.190 | 0.159 | 0.085 | Ghana |
| 0.116 | 0.146 | 0.216 | 0.193 | 0.166 | Madagascar | | 0.116 | 0.146 | 0.216 | 0.193 | 0.166 | 0.086 | Madagascar |
| 0.113 | 0.149 | 0.220 | 0.193 | 0.162 | Comoros | | 0.113 | 0.149 | 0.220 | 0.193 | 0.162 | 0.085 | Comoros |
| 0.112 | 0.142 | 0.205 | 0.188 | 0.169 | Zimbabwe | | 0.112 | 0.142 | 0.205 | 0.188 | 0.169 | 0.085 | Zimbabwe |
| 0.112 | 0.146 | 0.216 | 0.193 | 0.161 | Rwanda | | 0.112 | 0.146 | 0.216 | 0.193 | 0.161 | 0.083 | Rwanda |
| 0.111 | 0.146 | 0.208 | 0.184 | 0.165 | Senegal | | 0.111 | 0.146 | 0.208 | 0.184 | 0.165 | 0.083 | Senegal |
| 0.110 | 0.144 | 0.203 | 0.182 | 0.166 | Democratic Republic of the Congo | | 0.110 | 0.144 | 0.203 | 0.182 | 0.166 | 0.081 | Democratic Republic of the Congo |
| 0.107 | 0.139 | 0.202 | 0.175 | 0.160 | Yemen | | 0.107 | 0.139 | 0.202 | 0.175 | 0.160 | 0.078 | Yemen |
| 0.106 | 0.141 | 0.203 | 0.174 | 0.159 | Sierra Leone | | 0.106 | 0.141 | 0.203 | 0.174 | 0.159 | 0.079 | Sierra Leone |
| 0.103 | 0.165 | 0.239 | 0.197 | 0.135 | Kiribati | | 0.103 | 0.165 | 0.239 | 0.197 | 0.135 | 0.076 | Kiribati |
| 0.103 | 0.136 | 0.192 | 0.168 | 0.160 | Mozambique | | 0.103 | 0.136 | 0.192 | 0.168 | 0.160 | 0.076 | Mozambique |
| 0.102 | 0.135 | 0.192 | 0.168 | 0.158 | Somalia | | 0.102 | 0.135 | 0.192 | 0.168 | 0.158 | 0.075 | Somalia |
| 0.102 | 0.139 | 0.202 | 0.168 | 0.152 | Togo | | 0.102 | 0.139 | 0.202 | 0.168 | 0.152 | 0.075 | Togo |
| 0.101 | 0.137 | 0.201 | 0.166 | 0.152 | Congo | | 0.101 | 0.137 | 0.201 | 0.166 | 0.152 | 0.075 | Congo |
| 0.101 | 0.133 | 0.191 | 0.166 | 0.156 | Central African Republic | | 0.101 | 0.133 | 0.191 | 0.166 | 0.156 | 0.074 | Central African Republic |
| 0.100 | 0.134 | 0.194 | 0.166 | 0.154 | Guinea | | 0.100 | 0.134 | 0.194 | 0.166 | 0.154 | 0.074 | Guinea |
| 0.100 | 0.135 | 0.197 | 0.165 | 0.152 | Côte d'Ivoire | | 0.100 | 0.135 | 0.197 | 0.165 | 0.152 | 0.074 | Côte d'Ivoire |
| 0.098 | 0.130 | 0.189 | 0.160 | 0.153 | Cameroon | | 0.098 | 0.130 | 0.189 | 0.160 | 0.153 | 0.072 | Cameroon |
| 0.097 | 0.130 | 0.192 | 0.160 | 0.150 | Guinea-Bissau | | 0.097 | 0.130 | 0.192 | 0.160 | 0.150 | 0.071 | Guinea-Bissau |
| 0.097 | 0.129 | 0.183 | 0.157 | 0.155 | Malawi | | 0.097 | 0.129 | 0.183 | 0.157 | 0.155 | 0.071 | Malawi |
| 0.096 | 0.129 | 0.186 | 0.157 | 0.152 | United Republic of Tanzania | | 0.096 | 0.129 | 0.186 | 0.157 | 0.152 | 0.071 | United Republic of Tanzania |
| 0.096 | 0.128 | 0.184 | 0.156 | 0.151 | Afghanistan | | 0.096 | 0.128 | 0.184 | 0.156 | 0.151 | 0.070 | Afghanistan |
| 0.094 | 0.122 | 0.186 | 0.153 | 0.148 | Kenya | | 0.094 | 0.122 | 0.186 | 0.153 | 0.148 | 0.070 | Kenya |
| 0.094 | 0.130 | 0.190 | 0.154 | 0.145 | Nigeria | | 0.094 | 0.130 | 0.190 | 0.154 | 0.145 | 0.068 | Nigeria |
| 0.092 | 0.118 | 0.179 | 0.149 | 0.149 | Equatorial Guinea | | 0.092 | 0.118 | 0.179 | 0.149 | 0.149 | 0.069 | Equatorial Guinea |
| 0.091 | 0.126 | 0.177 | 0.146 | 0.149 | Gambia | | 0.091 | 0.126 | 0.177 | 0.146 | 0.149 | 0.067 | Gambia |
| 0.091 | 0.116 | 0.170 | 0.150 | 0.152 | Chad | | 0.091 | 0.116 | 0.170 | 0.150 | 0.152 | 0.067 | Chad |
| 0.090 | 0.112 | 0.203 | 0.141 | 0.126 | Qatar | | 0.090 | 0.112 | 0.203 | 0.141 | 0.126 | 0.067 | Qatar |
| 0.088 | 0.121 | 0.172 | 0.146 | 0.147 | Niger | | 0.088 | 0.121 | 0.172 | 0.146 | 0.147 | 0.064 | Niger |
| 0.088 | 0.118 | 0.173 | 0.144 | 0.145 | Burkina Faso | | 0.088 | 0.118 | 0.173 | 0.144 | 0.145 | 0.064 | Burkina Faso |
| 0.088 | 0.109 | 0.169 | 0.144 | 0.146 | Burundi | | 0.088 | 0.109 | 0.169 | 0.144 | 0.146 | 0.064 | Burundi |
| 0.087 | 0.117 | 0.169 | 0.145 | 0.147 | Mali | | 0.087 | 0.117 | 0.169 | 0.145 | 0.147 | 0.064 | Mali |
| 0.085 | 0.111 | 0.164 | 0.139 | 0.145 | Angola | | 0.085 | 0.111 | 0.164 | 0.139 | 0.145 | 0.063 | Angola |
| 0.083 | 0.104 | 0.190 | 0.130 | 0.124 | United Arab Emirates | | 0.083 | 0.104 | 0.190 | 0.130 | 0.124 | 0.063 | United Arab Emirates |
| 0.083 | 0.107 | 0.158 | 0.134 | 0.144 | Zambia | | 0.083 | 0.107 | 0.158 | 0.134 | 0.144 | 0.061 | Zambia |
| 0.074 | 0.099 | 0.147 | 0.121 | 0.137 | Uganda | | 0.074 | 0.099 | 0.147 | 0.121 | 0.137 | 0.054 | Uganda |
| ENE-COV | US_CDC | Verity | Levin | Gudbj | O'Drisc | Region |
Note that in addition to countries, there are rows for each continent and for the world. Note that in addition to countries, there are rows for each continent and for the world.
## Findings ## Findings
The overall IFR estimates, with the exception of Levin et al., are relatively The overall IFR estimates, with the exception of Levin et al. and ODriscoll et al., are relatively
consistent with each other, usually within 30-40%. Levin et al. is up to consistent with each other, usually within 30-40%. Levin et al. is up to
2-fold higher than the others, depending on the country. 2-fold higher than the others, depending on the country.
The country with the oldest population is expected to have the highest overall The country with the oldest population is expected to have the highest overall
IFR: Japan at 1.3-1.6% (excluding Levin et al.) IFR: Japan at 1.3-1.6% (excluding Levin et al. and ODriscoll et al.)
The country with the youngest population is expected to have the lowest overall The country with the youngest population is expected to have the lowest overall
IFR: Uganda at 0.074-0.147% IFR: Uganda at 0.074-0.147%
+27 -4
View File
@@ -89,6 +89,29 @@ ifrs = [
(81,maxage): 11.2, (81,maxage): 11.2,
}), }),
# ODriscoll et al., Age-specific mortality and immunity patterns of SARS-CoV-2 infection in 45 countries
# https://www.medrxiv.org/content/10.1101/2020.08.24.20180851v1
# (table S4)
("O'Drisc", {
(0,4): 0.002,
(5,9): 0.000,
(10,14): 0.000,
(15,19): 0.002,
(20,24): 0.004,
(25,29): 0.009,
(30,34): 0.017,
(35,39): 0.029,
(40,44): 0.053,
(45,49): 0.086,
(50,54): 0.154,
(55,59): 0.241,
(60,64): 0.359,
(65,69): 0.642,
(70,74): 1.076,
(75,79): 2.276,
(80,maxage): 7.274,
}),
] ]
def ag2str(age_group): def ag2str(age_group):
@@ -148,8 +171,8 @@ def calc_overall_ifrs():
def show_overall_ifrs(oifrs): def show_overall_ifrs(oifrs):
def header(): def header():
for i in ifrs: for i in ifrs:
print(f'{i[0]:>7} ', end='') print(f'| {i[0]:>7} ', end='')
print('') print('| Region |')
# Each entry in the oifrs array is a tuple: # Each entry in the oifrs array is a tuple:
# (<region_name>, <ifr_according_to_1st_estimate>, <ifr_according_to_2nd_estimate>, ...) # (<region_name>, <ifr_according_to_1st_estimate>, <ifr_according_to_2nd_estimate>, ...)
# Sort by element index 1, that is by <ifr_according_to_1st_estimate> # Sort by element index 1, that is by <ifr_according_to_1st_estimate>
@@ -158,8 +181,8 @@ def show_overall_ifrs(oifrs):
header() header()
for region in oifrs: for region in oifrs:
for i in region[1:]: for i in region[1:]:
print(f'{i:7.3f} ', end='') print(f'| {i:7.3f} ', end='')
print(f' {region[0]}') print(f'| {region[0]} |')
header() header()
def main(): def main():